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% jSEDI Template -- March 2025
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% Possible option: letter (for Methods section)
\documentclass[letter]{jsedi_sub}
%\documentclass[]{jsedi_sub}
% Article type: letter, review, comment, reply
% breakmath breaks the equations that are too long
% proof prints a proof watermark
% onecolumn only if issue with breakmath
\title{Your article title goes here}
\shorttitle{Your short title goes here} % used for header, not mandatory but recommended
\author[1]{Name ~Firstauthor
\orcid{1111-1111-1111-1111}
\thanks{Corresponding author:
\href{mailto:firstauthor@university.jp}{\texttt{firstauthor@university.jp}}}
}
\author[2]{Name~Secondauthor
\orcid{2222-2222-2222-2222}
}
\author[1,3]{Name~Thirdauthor
\orcid{3333-3333-3333-3333}
}
\affil[1]{Department of Earth Sciences, A University, City, Country}
\affil[2]{School of Earth Sciences, Another University, City, Country}
\affil[3]{Center for Studying Cool Things, University of X, City, Country}
%% Author CRediT roles
%% Please use the CRediT roles as defined at https://casrai.org/credit
%% Use as many roles as necessary; there is no requirement to use all 14 roles
\credit{Conceptualization}{Name Firstauthor, Name Thirdauthor}
%\credit{Methodology}{people}
%\credit{Software}{people}
%\credit{Validation}{people}
\credit{Formal Analysis}{Name Firstauthor, Name Secondauthor}
%\credit{Investigation}{people}
%\credit{Resources}{people}
\credit{Writing - Original draft}{Name Firstauthor}
\credit{Writing - Review \& Editing}{Name~Firstauthor, Name~Secondauthor, Name~Thirdauthor}
%\credit{Visualization}{people}
%\credit{Supervision}{people}
%\credit{Project administration}{people}
%\credit{Funding acquisition}{people}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Several abstracts
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% the command \makesedititle does not allow page breaks in preprint mode. If you have
%% many abstracts, you can use the command \addsummaries. It will induce a pagebreak.
\addbibresource{jrn.bib}
\addbibresource{mybibfile.bib}
\begin{document}
%%%-- for publication only, using data (doi, etc.) provided by the editorial board upon acceptance of paper
\publicationonly{
\dois{10.26443/jsedi.v2i1.N}
\handedname{Efirstname Elastname}
\receiveddate{September 23, 2024}
\accepteddate{January 6, 2025}
\publisheddate{January 11, 2025}
\theyear{2025}
\thevolume{2}
\thepaper{1} %% article number
}
%% Your article can include up to 3 abstracts. The first is the English language abstract.
%% For other languages in the second and third optional abstracts, you might have to define
%% additional font(s) in preamble above
%% You can also include a non-technical summary in addition to the abstract(s)
\makesedititle{
\begin{summary}{Abstract}
The text for the first abstract goes here. This should be in English, no longer than 200 words,
and should not include references.
\vspace{1.3cm} % because abstract is too short
\end{summary}
\begin{summary}{Non-technical summary}
The text goes here. Again, no longer than 200 words, no reference.
\vspace{1.3cm} % because abstract is too short
\end{summary}
}
\section{Introduction}
This document explains the use of the \LaTeX{} template for
submission of paper to
\href{https://jsedi.episciences.org/}{jSEDI}. It is by no
means intended to be a \LaTeX{} documentation but it should help authors
not familiar with \LaTeX{} to use it in this context. Note that
typesetting complying with the journal's template is the full
responsibility of the authors. The editors may provide a limited help
depending on their availability. Once accepted, the
authors must prepare the final version, using the relevant template
which incorporates the doi provided by the journal. Switching from
one template to the other is straightforward.
All articles must include an abstract, authors' ORCID and author
contributions (in the preamble of this tex file), a data
availability statement, and a list of references.
\section{Article structure}
Section names are at the discretion of the authors. A simple
structure for an article would include an Introduction,
Methods and Data, Results, Discussion, and Conclusions, but
authors are encouraged to choose a structure that best
presents their work.
Three levels of headings (\texttt{\textbackslash section}, \texttt{\textbackslash subsection}, \texttt{\textbackslash subsubsection}) is the maximum\footnote{Seriously, the maximum}
- no subsubsubsections please!
Note that footnotes are allowed, as demonstrated in the previous sentence.
However, we encourage authors to carefully consider whether a
footnote is truly necessary or if the information it contains could be integrated into the main text.
\section{Figures and tables}
Figures should be labeled, captioned, and referenced in the text, e.g., \cref{mysmallfig} % Fig.~\ref{mysmallfig}
and
figs~\ref{mysmallfig}(a), \ref{mysmallfig}(b), \ref{mymediumfig}(c).
Figures should appear in the order in which they are first mentioned in the text.
While \cref{mysmallfig} is a one-column figure, \cref{mymediumfig}
is a full-width figure.
%% Accepted articles will be typeset in a 2-column format.
%% Figures can be either be 1-column wide or page-wide. One column is 8.6 cm wide.
%% Here, Figure 1 is a 1-column figure.
\begin{figure}[ht!]
\includegraphics[width=8.6cm]{empty}
\caption{This is an example of a figure caption.}
\label{mysmallfig}
\end{figure}
%% This is a page-wide figure
\begin{figure*}[ht!]
\centering
\includegraphics[width=\textwidth]{empty}
\caption{This is a caption on wider figure.}
\label{mymediumfig}
\end{figure*}
Tables can also be included, with captions before the tabulars themselves.
Tables must appear in the order in which they are
mentioned in the text.
%% Use \begin{table*} for a page-wide table
\begin{table}[ht!]
\caption{Caption}
\label{mytab}
\begin{tabular}{llcr}
Event ID & Location & Magnitude & A random number \\
\hline
1 & Here & 2.5 & 17 \\
2 & There & 4.1 & 1350 \\
\end{tabular}
\end{table}
\Cref{mytab} %(use Tabs if there are several tables)
is an example of a
relatively simple table. We strongly encourage authors to put large tables
in Supplementary Materials, and/or into a csv or similar format,
upload them to a data repository such as \href{https://zenodo.org/}{zenodo}, and reference
them in the section on data availability instead of including them in the article itself.
\section{Mathematics}
Equations can be included in the text, and should be labeled so they can be referenced. Punctuation should also be used in equations to properly integrate them with the text.
One example is \cref{myeq}:% Equation \eqref{myeq}:
\begin{equation} \label{myeq}
\int_{OC}\rho_a\left(T_a\frac{\partial s_a}{\partial t}+\mu_{Si}\frac{\partial\xi_{Si}}{\partial t}+\mu_O\frac{\partial\xi_O}{\partial t}\right)\mathrm{d}V=T_L(r_{IC})\Delta
S 4\pi r_{IC}^2\frac{\mathrm{d}r_{IC}}{\mathrm{d}t} + Q_R+Q^{ICB}-Q^{CMB}.
% \mathrm{G} = \frac{1}{2}(2\cos z) + \frac{1}{2}(2\cos z+j\sin z-j\sin z) +
% \frac{1}{2}(\cos z+j\sin z+\cos z-j\sin z) - \frac{1}{2}\left(e^{jz}+e^{-jz}\right).
\end{equation}
Unlike what is done here, all symbols must be defined when first introduced.
Please type vectors and matrices in bold: $\vec{X} = \left[x_1,x_2,\ldots,x_n \right]^T$. A bold centered dot, provided by the \texttt{\textbackslash bcdot} command,
should be used for a scalar product, as in $\vec{a} \bcdot \vec{b}$. Likewise, the
\texttt{\textbackslash bnabla} command provides authors with a bold nabla symbol, $\bnabla$.
Authors should avoid multiple-letter symbols
except in the case of dimensionless numbers such as $Re$, $Pr$ and $Ra$ (Reynolds, Prandtl,
and Rayleigh numbers respectively). An example of a set of equations that combines dimensionless
numbers and vector operators is
\begin{subequations}
\begin{align}
\bnabla \cdot \vec{u} &= 0, \label{eq:divu}\\
\frac{\partial \vec{u}}{\partial t} + \vec{u} \bcdot \bnabla \vec{u} + 2 \vec{e}_z \times
\vec{u} &= -\bnabla {p} + \frac{Ra\,E^2}{Pr} {g} {T} \vec{e}_r + E\vec{\bnabla}^2 \vec{u},
\label{eq:NS}\\
\frac{\partial {T}}{\partial t} + \vec{u} \bcdot \bnabla {T} &= \frac{E}{Pr} \bnabla^2 {T}
\label{eq:temp}\,.
\end{align}
\end{subequations}
%Use the \texttt{\textbackslash eqref} command to link to your equations,
%and \texttt{\textbackslash ref} for your labeled figures and tables.
\section{Cross-referencing}
Figures, tables and equations should all be labeled for cross-referencing in the text.
This is done using the \texttt{\textbackslash label} command in the relevant environment, as shown in the present document.
Cross-referencing in the text can then be done using a variety of commands. We recommend the use of \href{https://www.dr-qubit.org/latex/cleveref.pdf}{\texttt{cleveref}} commands, \texttt{\textbackslash cref} inside a sentence or \texttt{\textbackslash Cref} at the begining of a sentence, which automatically adds the appropriate term (Fig., Tab., Eq. etc.) before the object number.
For example, \cref{eq:divu,eq:NS,eq:temp} are important equations and this cross-referencing is done using \texttt{\textbackslash cref}.
You can still use the standard \LaTeX{} \texttt{\textbackslash ref} and \texttt{\textbackslash eqref} (for equations) commands if you prefer.
\section{Citations and references}
Our template uses \texttt{biblatex} and \texttt{biber} to
generate the bibliography. The \texttt{bib} files storing all
the entries are declared in the document preamble using an
\texttt{\textbackslash addbibresource\{\}} instruction per
file. We provide two such files, including \texttt{jrn.bib} that contains
\texttt{\textbackslash string\{\}} instructions for the many common
journals to help abbreviating their names.
In the text of an article, citations may either be in-line, using
\texttt{\textbackslash citet} or \texttt{\textbackslash textcite}, as in the case of citing \citet{Chandra61},
or in parentheses, using \texttt{\textbackslash citep} or \texttt{\textbackslash parencite}
\parencite[e.g.][]{Rayleigh16,Chandra61}.
All citations in the text must be listed in the references section,
and all listed references must be cited at least once in the text.
%nstruction \texttt{\textbackslash textcite} and \texttt{\textbackslash parencite} should be favored since they are native \texttt{biblatex}.
There are other ways to format citations in \LaTeX -- for example
using \texttt{\textbackslash citeauthor\{\}} and
\texttt{\textbackslash citeyear\{\}}. We ask that you stick to
the instruction discussed in the previous paragraph.
%\texttt{\textbackslash citep}
%and \texttt{\textbackslash citet} as shown in the preceding paragraph.
\section{Compilation}
The pdf document is produced by running \texttt{pdflatex
jSEDI\_template.tex}, then \texttt{biber jSEDI\_template}, and \texttt{pdflatex
jSEDI\_template.tex} twice so that all cross references are
correct. When using a \LaTeX\ editor (e.g. TeXShop), make sure to set \texttt{biber} as engine for the bibliography, not \texttt{bibtex}. Please pay attention to warnings and errors.
The version of TeXLive used must not be earlier than 2018.
Alternatively, the template is known to work well on \href{https://www.overleaf.com/}{overleaf}, which does not require you to install \LaTeX{} on your computer.
\begin{acknowledgements}
Thank all relevant parties and acknowledge funding sources, if any.
\end{acknowledgements}
\section*{Data availability}
In order to comply with FAIR principles \parencite{Wilkinson2016FAIR}, authors should direct readers to an open access repository where the
data used in the study are made available. Data is understood here
in its broadest sense: source codes, observational datasets, experimental datasets,
numerical datasets, etc. Examples of repositories where authors
can archive their data include, but are not limited to,
\href{https://zenodo.org/}{zenodo}
%\href{https://figshare.com/}{figshare},
and \href{https://datadryad.org}{Dryad}.
Proper citations for codes and datasets should be included in
the references.
Commercial source-code-hosting facilities, such as
Github and bitbucket, are not considered persistent repositories,
and we encourage authors to archive a snapshot of any code hosted
in such a facility in a perennial repository, such as \href{https://www.softwareheritage.org/}{Software Heritage}.
A tutorial about linking your article to an archived software can be found at
\href{https://doc.episciences.org/software/#linking-software}
{episciences}.
%A voir :
%\begin{verbatim}
%A documentation about citing softwares can
%be found there: https://www.softwareheritage.org/2020/
%05/26/citing-software-with-style/ and a documentation
%about linking your article to a software here: https://
%doc.episciences.org/software/#linking-software.
%\end{verbatim}
\section*{Competing interests}
Declare any competing interests, financial or otherwise, pertaining to
any of the authors. If there are none, state that the authors have no
competing interests.
\section{Frequently asked \LaTeX{} template questions}
\paragraph{Can I modify the cls file?} Please do not do this!
Modifying the class file may make your article incompatible with
our publication template, which will delay publication if your
article is accepted.
(If you want to adapt our cls file for your own purposes outside
of submitting articles to jSEDI, feel free to do so with
attribution. Our cls file has been adapted from that of
\href{https//seismica.org}{Seismica}.)
\paragraph{Can I add packages to the template?}
Yes, as long as they are compliant with the template. If a specific
package creates errors upon compilation, preferentially avoid using it
and you may contact the journal team that can try to study the matter,
with no guarantee.
\paragraph{What's the best way to track changes for revisions?}
There are numerous \LaTeX{} packages available (e.g., \href{https://trackchanges.sourceforge.net/}{\texttt{trackchanges}}) for this purpose,
and you are welcome to use whichever one you prefer. Alternatively, you can use a tool like
\texttt{latexdiff} to identify and format tracked changes between an initial \texttt{.tex} file and a revised version. This approach allows you to generate a clean, revised .tex file for production without the need for additional packages.
%% Only if expresletter
\begin{methods}
\subsection{The methods environment}
In the one and only case of a letter (\texttt{letter} option activated),
a \textit{methods} section is available as a \LaTeX{} environment; this optional section should appear just before the bibliography.
\subsection{Sectionning}
The \textit{methods} section can be divided into several subsections, if needed. New bibliographic references can be included \parencite[e.g.][]{Love1934}.
\end{methods}
\printbibliography%[filter=onlymain]
\end{document}